#Jmol simulation code#

The Molecular Workbench Software: An Innovative Dynamic Modeling Tool for Nanoscience Education. Journal of Computational Chemistry 2015, 36 STOCK: Structure mapper and online coarse-graining kit for molecular simulations.

Staš Bevc, Christoph Junghans, Matej Praprotnik.

Journal of Computer-Aided Molecular Design 2015, 29 Poly-glutamic dendrimer-based conjugates for cancer vaccination – a computational design for targeted delivery of antigens. Education and Information Technologies 2018, 23 Using virtual laboratories in chemistry classrooms as interactive tools towards modifying alternate conceptions in molecular symmetry.

Krishnashree Achuthan, Vysakh Kani Kolil, Shyam Diwakar.

Journal of Microbiology & Biology Education 2020, 21 Combining 3D-Printed Models and Open Source Molecular Modeling of p53 To Engage Students with Concepts in Cell Biology French-Ukrainian Journal of Chemistry 2020, 8 Structures and properties of three new homobinuclear nanosized supramolecular copper coordination polymers derived from carboxylate type ligands and benzimidazole. Immersive Molecular Dynamics in Virtual Reality: Increasing Efficiency of Educational Process with Companion Converter for NarupaXR.

Polina Pereshivkina, Nadezhda Karandasheva, Maria Mikhaylenko, Mikhail Kurushkin.

Easy Jmol Web Pages Using the Jmol Export to Web Function: A Tool for Creating Interactive Web-Based Instructional Resources and Student Projects with Live 3-D Images of Molecules without Writing Computer Code. Jmol-Enhanced Biochemistry Research Projects.

Matthew Saderholm and Anthony Reynolds.

Using Role-Playing Game Dice To Teach the Concepts of Symmetry. Physical Models That Provide Guidance in Visualization Deconstruction in an Inorganic Context. Journal of Chemical Information and Modeling 2012, 52 JACOB: A Dynamic Database for Computational Chemistry Benchmarking. Teaching Molecular Symmetry of Dihedral Point Groups by Drawing Useful 2D Projections. Lan Chen, Hongwei Sun, and Chengming Lai.Open-Access, Interactive Explorations for Teaching and Learning Quantum Dynamics. This article is cited by 17 publications. Our third goal in the development of our site was to include International Chemical Identifiers (InChIs) for each molecule to introduce students and educators to a new mechanism for identifying molecular resources and enabling their discovery using the Web search engines. Our second goal was to provide a library of molecules for student exercises to supplement their study of symmetry, using generic HTML templates populated using automatic tools based on Javascript. Our first goal was to animate symmetry operations and include interactive tools. Three primary pedagogic goals have been at the forefront in the development of our site.

#Jmol simulation code#

Jmol is an open-source code program that is free to all users and thus ideally suited for the development of teaching materials. In the following article we discuss our use of the program Jmol for the presentation of interactive materials to teach molecular symmetry. Illustrating and manipulating molecules in three dimensions are some of the truly wonderful advantages that computer technologies offer to chemistry teachers.